Publications using Qkine interleukin (IL) superfamily proteins

IL superfamily

IL superfamily is a large group of cytokines, including proteins known as interleukins and interleukin receptors. Members of this superfamily play pivotal roles in diverse biological processes such as immunity, inflammation, and hematopoiesis. Subgroups within the interleukin superfamily include the IL-1, IL-6, IL-10, IL-12, and IL-17 subfamilies, along with additional interleukins and receptors.

IL-1 subgroup includes IL-1α, IL-1β, IL-1RA, IL-18, IL-33, IL-36α, IL-36β, IL-36γ, IL-36RA, IL-37 and IL-38.

IL-6 subgroup includes IL-6, IL-11, CNTF, LIF, CT-1 and oncostatin (OSM).

IL-10 subgroup includes IL-10, IL-19, IL-20, IL-22, IL-24 and IL-26.

IL-12 subgroup includes IL-12, IL-23, IL-27, IL-35 and IL-39.

Beta common family IL-3, IL-5 and GM-CSF

T helper 2 (Th2) cytokine family IL-3, IL-4, IL-5 and IL-9.

human LIF

Arboit, M. et al. KLF7 is a general inducer of human pluripotency
Preprint (2023).

From the lab of Elena Carbognin and Graziano Martello, University of Padua

Used:
FGF-2 (Qk002)
human LIF (Qk036)

Carbognin, E. et al. Esrrb guides naive pluripotent cells through the formative transcriptional programme
Nat Cell Biol 25, 643–657 (2023).

From the labs of Jamie A. Hackett, European Molecular Biology Laboratory EMBL-Rome, Davide Cacchiarelli, Telethon Institute of Genetics and Medicine and Graziano Martello, University of Padua.

Used:
zebrafish FGF-2 (Qk002)
activin A (Qk001)
human LIF (Qk036)

Dinarello, A. et al. STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
Cell Death Discov. 9, 1–12 (2023).

From the lab of Graziano Martello and Francesco Argenton, University of Padova

Used:
human LIF (Qk036)

Ferlazzo, G. M. et al. Genome-wide screening in pluripotent cells identifies Mtf1 as a suppressor of mutant huntingtin toxicity
Nat Commun 14, 3962 (2023).

From the lab of Graziano Martello, University of Padova

Used:
human LIF (Qk036)
FGF-2 (Qk002)

Guo, M., Wu, J., Chen, C. et al. Self-renewing human naïve pluripotent stem cells dedifferentiate in 3D culture and form blastoids spontaneously
Nat Commun 15, 668 (2024).

From the lab of José Silva, Guangzhou Laboratory

Used:
activin A (Qk001)
human LIF (Qk036)

A huge challenge in understanding human early embryo cell fate is due to limited access and ethical concerns. Recent research, however, from José C. R. Silva’s lab at Guangzhou National Laboratory, drawing from single-cell sequencing, suggests a conserved lineage specification process between human and mouse embryos. Blastoids, emerging models for early embryo development, generated solely from hnPSCs, offer insights into blastocyst formation without altering culture conditions. Self-renewing human naïve pluripotent stem cells (hnPSCs) spontaneously form blastoids in 3D culture, mimicking early human blastocysts. This process, mediated by the GSK3 inhibitor IM-12 in 5iLAF medium, involves upregulation of oxidative phosphorylation genes. hnPSCs dedifferentiate into E5 embryo-like intermediates, expressing SOX2/OCT4 and GATA6, which specify trophoblast fate by day 3, coinciding with blastoid formation. This was a fantastic paper to read as it is clear how this spontaneous blastoid formation highlights the importance of culture conditions and provides a new platform to study human embryo development in vitro, potentially reshaping our understanding of hnPSCs and embryo development.

Heidari Khoei, H., Javali, A., Kagawa, H. et al. Generating human blastoids modeling blastocyst-stage embryos and implantation
Nat Protoc, (2023)

From the lab of Nicolas Rivron, IMBA, Austrian Academy of Sciences

Used:
human LIF (Qk036)

Mulas, C., Stammers, M., Salomaa, S. I. et al. ERK signalling eliminates Nanog and maintains Oct4 to drive the formative pluripotency transition
Development 151:14 (2024).

From the labs of Austin Smith, University of Cambridge and Kevin J. Chalut, University of Exeter

Used:
human LIF (Qk036)

Żylicz, J., van Nerum, K., Wenzel, A., Argemi Muntadas, L. et al. Metabolic rewiring underpins human trophoblast induction
Preprint (2024).

From the lab of Jan Żylicz, University of Copenhagen, Denmark

Used:
human LIF (Qk036)
human EGF (Qk011)

mouse LIF

Andrés-San Román, J. A. et al. CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia
Cell Rep. Methods 100597 (2023).

From the lab of Luis M. Escudero, University of Sevilla

Used:
mouse LIF (Qk018)

Ball, S. T. M. et al. Domain Specific AI Segmentation of IMPDH2 Rod/Ring Structures in Mouse Embryonic Stem Cells
bioRxiv preprint 2024

From the lab of David Turner, University of Liverpool, UK

Used:
mouse LIF (Qk018)

Borkowska, M. & Leitch, H. G. Mouse Primordial Germ Cells: In Vitro Culture and Conversion to Pluripotent Stem Cell Lines
Methods Mol Biol 2214, 59–73 (2021).

From the lab of Harry Leitch, Imperial College London

Used:
mouse LIF (Qk018)

Hennessy, M. J., Fulton, T., Turner, D. A. & Steventon, B. Negative feedback on Retinoic Acid by Brachyury guides gastruloid symmetry-breaking
bioRxiv (2023).

From the labs of David A. Turner, University of Liverpool and Ben Steventon, University of Cambridge

Used:
mouse LIF (Qk018)

Klobučar, T. et al. Integrative analysis of higher-order transcriptome organisation and RNA condensation principles
bioRxiv preprint (2024)

From the lab of Miha Modic, National Institute of Chemistry, Ljubljana, Slovenia

Used:
mouse LIF (Qk018)

Krammer, T. and Tanaka, E.M. Neural tube organoid generation: a robust and reproducible protocol from single mouse embryonic stem cells
Preprint (2024).

From the lab of Elly M. Tanaka, Francis Crick Institute and the Research Institute of Molecular Pathology (IMP) of Vienna

Used:
mouse LIF (Qk018)

Krammer, T., Stuart, H. T., Gromberg, E. et al. Mouse neural tube organoids self-organize floorplate through BMP-mediated cluster competition
Developmental Cell 59, 1940–1953 (2024).

From the labs of James Briscoe and Elly M. Tanaka, Francis Crick Institute and the Research Institute of Molecular Pathology (IMP) of Vienna

Used:
mouse LIF (Qk018)

This paper gives us insight into the complex regulatory interactions between BMP-4 and noggin during neural tube development. Neural tube organoids from embryonic stem cells will organize into floorplates, without the usual inducers present in the developing embryo. They used mouse neural tube organoids and by identifying the floorplate marker FOXA2 they showed the importance of regulation of BMP-4 signaling through noggin. Noggin mutation reduced neural tube organization and floorplate formation in vitro and in vivo.

Li, H., Chang, L., Huang, J. and Silva, J. Protocol for generating mouse morula-like cells resembling 8- to 16-cell stage embryo cells
STAR Protocols 5:2 (2024).

From the lab of José Silva, Guangzhou Laboratory

Used:
mouse LIF (Qk018)

Generating cell types with properties of embryo cells with full developmental potential is of great biological importance. This paper describe steps for induction and isolation of MLCs by sorting. They explained the procedures for segregating MLCs into blastocyst cell fates and how to create embryo-like structures from them. This system provides a valuable stem-cell-based embryo model to study early embryo development.

Li, H., Huang, J., Guan, W. et al. Chemically induced cell plasticity enables the generation of high-fidelity embryo model
Preprint (2024).

From the lab of José Silva, Guangzhou Laboratory

Used:
mouse LIF (Qk018)

Rosa, V. S. et al. Protocol for generating a 3D culture of epiblast stem cells
STAR Protocols, 5:4 (2024)

From the lab of Dr Marta Shahbazi, MRC Laboratory of Molecular Biology, Cambridge

Used:
Activin A (Qk001)
FGF-2 (Qk002)
mouse LIF (Qk018)

Stuart, H. T. et al. Distinct Molecular Trajectories Converge to Induce Naive Pluripotency
Cell Stem Cell 25, 388-406.e8 (2019).

Reviewers comments available to view: Stadtfeld, M. Evaluation of Stuart et al.: Distinct Molecular Trajectories Converge to Induce Naive Pluripotency.
Cell Stem Cell 25, 297–298 (2019). doi: 10.1016/j.stem.2019.08.009

From the lab of José Silva, University of Cambridge

Used:
Activin A (Qk001)
zFGF2 / bFGF (Qk002)
mouse LIF (Qk018)